Keywords



Open3DALIGN operations are controlled by a series of keywords, and their relative options. The syntax is very simple; the following example covers all possible cases:

keyword  parameter_1=string_or_numeric_value_1  \
    parameter_2=numeric_value_1,numeric_value_2  \
    parameter_3=numeric_value_1-numeric_value_n  \
    parameter_4=numeric_value_1,numeric_value_2-numeric_value_n,numeric_value_m  \
    parameter_5=filename  \
    parameter_6="filename with spaces"  \
    parameter_7=filename\ with\ spaces


Keywords and parameters are separated by spaces or tabulations; no extra spaces should be inserted (e.g., between parameter and values or inside values) or error messages will be issued. Spaces can be inserted in values (e.g., for filenames containing spaces) only if the whole value is enclosed between quotes; alternatively, spaces can be preceded by a backslash (see example above). Comments can be entered after the # symbol. Line feeds separate one keyword from the one which follows; as in the shell, one may divide parameters belonging to a single keyword by line feeds to improve readability of the scripts if a backslash is inserted before the line feed, as in the example reported above.

Here follows an alphabetic list of all currently available keywords. Clicking on each keyword an extended explanation will be provided along with all relevant options, examples of use and, when appropriate, details about the implementation and scientific background.

  • system

  • Sitemap
    Print version
    Contact
    Mailing list


    Last update:
    May 31. 2015 20:39:55

    Powered by
    CMSimple - CMSimple-Styles


    Get Open3DALIGN at SourceForge.net. Fast, secure and Free Open Source software downloads



    Would you like to test your
    alignment in a 3D-QSAR
    model? Try Open3DQSAR
    Just wish to compute a MIF?
    Try Open3DGRID