env


SYNOPSIS

env  variable=<value>

DESCRIPTION

The env keyword is used to assign/change the value of certain internal variables relevant to Open3DALIGN. Currently, the following variables may be affected by the env keyword:


EXAMPLES

# the following command sets the nice value to 10 (Linux, Solaris, FreeBSD, Mac OS X)
env  nice=10

# the following command sets the nice value to NORMAL (Windows)
env  nice=NORMAL

# the following command sets the PyMOL path on Windows
env  pymol="C:\Program Files\PyMOL\pymol.bat"

# the following command sets the FIREFLY path on Linux
env  qm_engine=/software/firefly_71g_linux_mpich_p4/firefly

# the following invokes Open3DALIGN after setting the RANDOM_SEED environment variable to 3758642 (csh):
$ setenv  RANDOM_SEED  3758642
$ open3dalign  -i input_script.inp  -o output_script.out

# the following invokes Open3DALIGN after setting the RANDOM_SEED environment variable to 3758642 (bash):
$ export  RANDOM_SEED=3758642
$ open3dalign  -i input_script.inp  -o output_script.out

# the following invokes Open3DALIGN after setting the O3_SAVE_RAM environment variable (Windows CMD):
C:\Users\user> set  RANDOM_SEED=3758642
C:\Users\user> open3dalign  -i input_script.inp  -o output_script.out

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Last update:
May 31. 2015 20:39:55

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